IL_9R9P_184

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9R9P|1|C2|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_184 not in the Motif Atlas

Homologous match to IL_9H3G_214

Geometric discrepancy: 0.5321

The information below is about IL_9H3G_214

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9R9P|1|C2|G|1178
9R9P|1|C2|G|1179
*
9R9P|1|C2|C|1459
9R9P|1|C2|A|1460
9R9P|1|C2|C|1461

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A