IL_9R9P_195

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UCUGU

Length

7 nucleotides

Bulged bases

9R9P|1|C2|C|1431, 9R9P|1|C2|U|1432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_195 not in the Motif Atlas

Homologous match to IL_9PN5_208

Geometric discrepancy: 0.1131

The information below is about IL_9PN5_208

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9R9P|1|C2|G|1277
9R9P|1|C2|G|1278
*
9R9P|1|C2|U|1430
9R9P|1|C2|C|1431
9R9P|1|C2|U|1432
9R9P|1|C2|G|1433
9R9P|1|C2|U|1434

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

40S ribosomal protein S10-A

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14A