IL_9RFW_007

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|G|188
9RFW|1|a|G|189
9RFW|1|a|A|190
9RFW|1|a|A|191
9RFW|1|a|C|192
9RFW|1|a|U|193
9RFW|1|a|G|194
*
9RFW|1|a|C|201
9RFW|1|a|U|202
9RFW|1|a|A|203
9RFW|1|a|A|204
9RFW|1|a|G|205
9RFW|1|a|U|206
9RFW|1|a|A|207
9RFW|1|a|C|208

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain C

Manikomycin

Chain D

Manikomycin

Chain k

50S ribosomal protein L15

Chain w

Large ribosomal subunit protein bL28