IL_9RFW_012
3D structure
- PDB id
- 9RFW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 9RFW|1|a|A|504, 9RFW|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RFW_012 not in the Motif Atlas
- Geometric match to IL_8B0X_075
- Geometric discrepancy: 0.0285
- The information below is about IL_8B0X_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.3
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9RFW|1|a|G|481
9RFW|1|a|A|482
9RFW|1|a|A|483
9RFW|1|a|C|484
*
9RFW|1|a|G|496
9RFW|1|a|A|497
9RFW|1|a|G|498
9RFW|1|a|U|499
9RFW|1|a|G|500
9RFW|1|a|A|501
9RFW|1|a|A|502
9RFW|1|a|A|503
9RFW|1|a|A|504
9RFW|1|a|A|505
9RFW|1|a|G|506
9RFW|1|a|A|507
9RFW|1|a|A|508
9RFW|1|a|C|509
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: