IL_9RFW_017
3D structure
- PDB id
- 9RFW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9RFW|1|a|G|801, 9RFW|1|a|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RFW_017 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1171
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.3
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9RFW|1|a|G|674
9RFW|1|a|A|675
9RFW|1|a|A|676
9RFW|1|a|A|677
9RFW|1|a|C|678
*
9RFW|1|a|G|799
9RFW|1|a|A|800
9RFW|1|a|G|801
9RFW|1|a|A|802
9RFW|1|a|U|803
9RFW|1|a|A|804
9RFW|1|a|G|805
9RFW|1|a|C|806
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain D
- Manikomycin
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- 50S ribosomal protein L15
Coloring options: