IL_9RFW_045

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RFW|1|a|A|1262
9RFW|1|a|U|1263
9RFW|1|a|A|1264
9RFW|1|a|A|1265
9RFW|1|a|G|1266
9RFW|1|a|U|1267
9RFW|1|a|A|1268
9RFW|1|a|A|1269
*
9RFW|1|a|U|2011
9RFW|1|a|G|2012
9RFW|1|a|A|2013
9RFW|1|a|A|2014
9RFW|1|a|A|2015
9RFW|1|a|U|2016
9RFW|1|a|U|2017

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32