IL_9RG7_091

3D structure

PDB id

9RG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro reconstituted NAA40-NAC bound 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RG7_091 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0388

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9RG7|1|L5|G|2358
9RG7|1|L5|U|2359
9RG7|1|L5|A|2360
9RG7|1|L5|G|2361
9RG7|1|L5|U|2362
9RG7|1|L5|A|2363
9RG7|1|L5|G|2364
*
9RG7|1|L5|C|3858
9RG7|1|L5|G|3859
9RG7|1|L5|A|3860
9RG7|1|L5|A|3861
9RG7|1|L5|A|3862
9RG7|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17