IL_9RHU_003
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 9RHU|1|A1|A|517
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_003 not in the Motif Atlas
- Geometric match to IL_8GLP_190
- Geometric discrepancy: 0.0566
- The information below is about IL_8GLP_190
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9RHU|1|A1|C|37
9RHU|1|A1|A|38
9RHU|1|A1|A|39
9RHU|1|A1|A|40
*
9RHU|1|A1|U|515
9RHU|1|A1|G|516
9RHU|1|A1|A|517
9RHU|1|A1|OMC|518
9RHU|1|A1|G|519
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain P1
- 40S ribosomal protein S4
- Chain U1
- Small ribosomal subunit protein uS4
Coloring options: