IL_9RHU_008
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- G(PSU)UAU*ACGUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_008 not in the Motif Atlas
- Geometric match to IL_9JA9_001
- Geometric discrepancy: 0.2896
- The information below is about IL_9JA9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9RHU|1|A1|G|108
9RHU|1|A1|PSU|109
9RHU|1|A1|U|110
9RHU|1|A1|A|111
9RHU|1|A1|U|112
*
9RHU|1|A1|A|350
9RHU|1|A1|C|351
9RHU|1|A1|G|352
9RHU|1|A1|U|353
9RHU|1|A1|C|354
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain P1
- 40S ribosomal protein S4
- Chain T1
- 40S ribosomal protein S8
- Chain W1
- Small ribosomal subunit protein uS17
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