IL_9RHU_021

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_021 not in the Motif Atlas

Homologous match to IL_9PN5_162

Geometric discrepancy: 0.0922

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9RHU|1|A1|G|438
9RHU|1|A1|G|439
9RHU|1|A1|A|440
*
9RHU|1|A1|U|455
9RHU|1|A1|A|456
9RHU|1|A1|C|457

Current chains

Chain A1

18S rRNA

Nearby chains

Chain R1

40S ribosomal protein S6

Chain T1

40S ribosomal protein S8