IL_9RHU_023

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

9RHU|1|A1|U|489

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_023 not in the Motif Atlas

Homologous match to IL_9H3G_178

Geometric discrepancy: 0.0913

The information below is about IL_9H3G_178

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RHU|1|A1|U|488
9RHU|1|A1|U|489
9RHU|1|A1|A|490
*
9RHU|1|A1|U|512
9RHU|1|A1|A2M|513

Current chains

Chain A1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S4

Chain U1

Small ribosomal subunit protein uS4

Chain j1

40S ribosomal protein S24

Chain q2

ATP binding cassette subfamily E member 1