IL_9RHU_031

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9RHU|1|A1|U|608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_031 not in the Motif Atlas

Homologous match to IL_9PN5_172

Geometric discrepancy: 0.2334

The information below is about IL_9PN5_172

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RHU|1|A1|G|607
9RHU|1|A1|U|608
9RHU|1|A1|C|609
*
9RHU|1|A1|G|636
9RHU|1|A1|C|637

Current chains

Chain A1

18S rRNA

Nearby chains

Chain E1

40S ribosomal protein eS30

Chain I1

mRNA containing F2A sequence

Chain O1

Small ribosomal subunit protein uS3

Chain U1

Small ribosomal subunit protein uS4