IL_9RHU_056

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_056 not in the Motif Atlas

Geometric match to IL_8GLP_245

Geometric discrepancy: 0.0486

The information below is about IL_8GLP_245

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9RHU|1|A1|U|1102
9RHU|1|A1|G|1103
9RHU|1|A1|C|1104
*
9RHU|1|A1|G|1130
9RHU|1|A1|G|1131
9RHU|1|A1|G|1132

Current chains

Chain A1

18S rRNA

Nearby chains

Chain B1

Small ribosomal subunit protein eS27

Chain F1

eS26

Chain M1

40S ribosomal protein S3a

Chain Y1

Small ribosomal subunit protein uS15

Chain c1

Small ribosomal subunit protein eS17