IL_9RHU_060

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

9RHU|1|A1|G|1208

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_060 not in the Motif Atlas

Homologous match to IL_9PN5_196

Geometric discrepancy: 0.0518

The information below is about IL_9PN5_196

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9RHU|1|A1|G|1207
9RHU|1|A1|G|1208
9RHU|1|A1|A|1209
*
9RHU|1|A1|U|1692
9RHU|1|A1|PSU|1693

Current chains

Chain A1

18S rRNA

Nearby chains

Chain F1

eS26

Chain I1

mRNA containing F2A sequence