IL_9RHU_081

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_081 not in the Motif Atlas

Geometric match to IL_8GLP_270

Geometric discrepancy: 0.0451

The information below is about IL_8GLP_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9RHU|1|A1|A|1538
9RHU|1|A1|C|1539
9RHU|1|A1|U|1540
*
9RHU|1|A1|A|1595
9RHU|1|A1|U|1596
9RHU|1|A1|U|1597

Current chains

Chain A1

18S rRNA

Nearby chains

Chain Q1

Small ribosomal subunit protein uS7

Chain b1

Small ribosomal subunit protein uS9

Chain d1

Small ribosomal subunit protein uS13

Chain e1

40S ribosomal protein eS19

Chain k1

Small ribosomal subunit protein eS25