IL_9RHU_092

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9RHU|1|A1|U|1722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_092 not in the Motif Atlas

Homologous match to IL_9PN5_226

Geometric discrepancy: 0.0987

The information below is about IL_9PN5_226

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RHU|1|A1|U|1721
9RHU|1|A1|U|1722
9RHU|1|A1|G|1723
*
9RHU|1|A1|U|1813
9RHU|1|A1|A|1814

Current chains

Chain A1

18S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain R2

Ribosomal protein L23

Chain i1

40S ribosomal protein S23

Chain l1

Small ribosomal subunit protein eS32