IL_9RHU_096

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_096 not in the Motif Atlas

Homologous match to IL_9PN5_231

Geometric discrepancy: 0.0869

The information below is about IL_9PN5_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9RHU|1|A1|C|1743
9RHU|1|A1|G|1744
9RHU|1|A1|G|1745
9RHU|1|A1|A|1746
9RHU|1|A1|U|1747
*
9RHU|1|A1|A|1789
9RHU|1|A1|G|1790
9RHU|1|A1|A|1791
9RHU|1|A1|A|1792
9RHU|1|A1|G|1793

Current chains

Chain A1

18S rRNA

Nearby chains

Chain R1

40S ribosomal protein S6

Chain S2

Ribosomal protein L24

Chain T1

40S ribosomal protein S8