IL_9RHU_104
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RHU_104 not in the Motif Atlas
- Homologous match to IL_8GLP_006
- Geometric discrepancy: 0.0359
- The information below is about IL_8GLP_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.6
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9RHU|1|A3|C|81
9RHU|1|A3|U|82
9RHU|1|A3|C|83
9RHU|1|A3|A|84
9RHU|1|A3|G|85
9RHU|1|A3|U|86
9RHU|1|A3|A|87
9RHU|1|A3|A|88
*
9RHU|1|A3|U|96
9RHU|1|A3|G|97
9RHU|1|A3|A|98
9RHU|1|A3|A|99
9RHU|1|A3|C|100
9RHU|1|A3|A|101
9RHU|1|A3|G|102
Current chains
- Chain A3
- 28S rRNA
Nearby chains
- Chain H2
- Large ribosomal subunit protein eL13
- Chain J2
- Ribosomal protein L15
- Chain M2
- eL18
- Chain W2
- 60S ribosomal protein L27a
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