IL_9RHU_105

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9RHU|1|A3|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_105 not in the Motif Atlas

Geometric match to IL_8GLP_007

Geometric discrepancy: 0.0564

The information below is about IL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36175.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9RHU|1|A3|C|118
9RHU|1|A3|G|119
9RHU|1|A3|A|120
9RHU|1|A3|A|121
*
9RHU|1|A3|U|152
9RHU|1|A3|G|153

Current chains

Chain A3

28S rRNA

Nearby chains

Chain C2

Large ribosomal subunit protein eL8

Chain J2

Ribosomal protein L15

Chain d2

60S ribosomal protein L35