IL_9RHU_110

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_110 not in the Motif Atlas

Homologous match to IL_8GLP_012

Geometric discrepancy: 0.4585

The information below is about IL_8GLP_012

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9RHU|1|A3|G|179
9RHU|1|A3|C|180
9RHU|1|A3|C|181
*
9RHU|1|A3|G|256
9RHU|1|A3|C|257

Current chains

Chain A3

28S rRNA

Nearby chains

Chain H2

Large ribosomal subunit protein eL13

Chain d2

60S ribosomal protein L35