IL_9RHU_116

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9RHU|1|A3|G|409, 9RHU|1|A3|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|387
9RHU|1|A3|A|388
9RHU|1|A3|A|389
9RHU|1|A3|C|390
*
9RHU|1|A3|G|401
9RHU|1|A3|A|402
9RHU|1|A3|G|403
9RHU|1|A3|U|404
9RHU|1|A3|U|405
9RHU|1|A3|C|406
9RHU|1|A3|A|407
9RHU|1|A3|A|408
9RHU|1|A3|G|409
9RHU|1|A3|A|410
9RHU|1|A3|G|411
9RHU|1|A3|G|412
9RHU|1|A3|G|413
9RHU|1|A3|C|414

Current chains

Chain A3

28S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain L2

Large ribosomal subunit protein uL22

Chain U2

Ribosomal protein L26

Chain h2

60S ribosomal protein L39-like