IL_9RHU_134

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

9RHU|1|A3|A|843, 9RHU|1|A3|A|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_134 not in the Motif Atlas

Geometric match to IL_8GLP_035

Geometric discrepancy: 0.0359

The information below is about IL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

9RHU|1|A3|A|717
9RHU|1|A3|C|718
*
9RHU|1|A3|G|842
9RHU|1|A3|A|843
9RHU|1|A3|A|844
9RHU|1|A3|U|845

Current chains

Chain A3

28S rRNA

Nearby chains

Chain B2

60S ribosomal protein L7

Chain F3

Large ribosomal subunit protein uL4