IL_9RHU_135

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

9RHU|1|A3|G|723, 9RHU|1|A3|G|724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_135 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0587

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9RHU|1|A3|C|721
9RHU|1|A3|U|722
9RHU|1|A3|G|723
9RHU|1|A3|G|724
9RHU|1|A3|G|725
*
9RHU|1|A3|C|838
9RHU|1|A3|G|839

Current chains

Chain A3

28S rRNA

Nearby chains

Chain B2

60S ribosomal protein L7

Chain I2

60S ribosomal protein L14

Chain O2

Large ribosomal subunit protein eL20