IL_9RHU_159

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9RHU|1|A3|A|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_159 not in the Motif Atlas

Homologous match to IL_8GLP_057

Geometric discrepancy: 0.0424

The information below is about IL_8GLP_057

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9RHU|1|A3|G|1500
9RHU|1|A3|C|1501
*
9RHU|1|A3|G|1567
9RHU|1|A3|A|1568
9RHU|1|A3|C|1569

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D3

Large ribosomal subunit protein uL2

Chain MB

60S ribosomal protein L34

Chain k2

60S ribosomal protein L37a