IL_9RHU_161

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_161 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.0371

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9RHU|1|A3|C|1506
9RHU|1|A3|G|1507
9RHU|1|A3|A|1508
9RHU|1|A3|A|1509
9RHU|1|A3|G|1510
*
9RHU|1|A3|U|1527
9RHU|1|A3|G|1528
9RHU|1|A3|G|1529
9RHU|1|A3|A|1530
9RHU|1|A3|G|1531

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D3

Large ribosomal subunit protein uL2

Chain N2

Ribosomal protein L19

Chain k2

60S ribosomal protein L37a