IL_9RHU_164

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

9RHU|1|A3|OMG|1580, 9RHU|1|A3|A|1592, 9RHU|1|A3|A|1593, 9RHU|1|A3|U|1594

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|1579
9RHU|1|A3|OMG|1580
9RHU|1|A3|G|1581
*
9RHU|1|A3|U|1591
9RHU|1|A3|A|1592
9RHU|1|A3|A|1593
9RHU|1|A3|U|1594
9RHU|1|A3|C|1595

Current chains

Chain A3

28S rRNA

Nearby chains

Chain D3

Large ribosomal subunit protein uL2

Chain G2

Choriogonadotropin subunit beta variant 1,Genome polyprotein,Genome polyprotein

Chain J2

Ribosomal protein L15

Chain L2

Large ribosomal subunit protein uL22

Chain f2

Ribosomal protein L37