IL_9RHU_175

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_175 not in the Motif Atlas

Geometric match to IL_8GLP_166

Geometric discrepancy: 0.2061

The information below is about IL_8GLP_166

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9RHU|1|A3|G|1699
9RHU|1|A3|G|1700
9RHU|1|A3|C|1701
9RHU|1|A3|C|1702
*
9RHU|1|A3|G|1708
9RHU|1|A3|A|1709
9RHU|1|A3|U|1710
9RHU|1|A3|C|1711

Current chains

Chain A3

28S rRNA

Nearby chains