IL_9RHU_176

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

9RHU|1|A3|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_176 not in the Motif Atlas

Homologous match to IL_8GLP_072

Geometric discrepancy: 0.0837

The information below is about IL_8GLP_072

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9RHU|1|A3|C|1753
9RHU|1|A3|G|1754
9RHU|1|A3|C|1755
*
9RHU|1|A3|G|1762
9RHU|1|A3|G|1763

Current chains

Chain A3

28S rRNA

Nearby chains

Chain G3

Large ribosomal subunit protein uL18

Chain P2

60S ribosomal protein L21

Chain X2

60S ribosomal protein L29