IL_9RHU_179

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

9RHU|1|A3|U|2009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_179 not in the Motif Atlas

Homologous match to IL_8GLP_075

Geometric discrepancy: 0.0513

The information below is about IL_8GLP_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9RHU|1|A3|U|1844
9RHU|1|A3|U|1845
9RHU|1|A3|A|1846
9RHU|1|A3|A|1847
9RHU|1|A3|G|1848
*
9RHU|1|A3|C|2006
9RHU|1|A3|C|2007
9RHU|1|A3|A|2008
9RHU|1|A3|U|2009
9RHU|1|A3|A|2010

Current chains

Chain A3

28S rRNA

Nearby chains

Chain B2

60S ribosomal protein L7

Chain B3

5S ribosomal RNA; 5S rRNA

Chain M2

eL18

Chain a2

Ribosomal protein L32

Chain b2

60S ribosomal protein L35a