IL_9RHU_190

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

9RHU|1|A3|G|2186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_190 not in the Motif Atlas

Homologous match to IL_8GLP_084

Geometric discrepancy: 0.0345

The information below is about IL_8GLP_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9RHU|1|A3|C|2133
9RHU|1|A3|G|2134
9RHU|1|A3|C|2135
*
9RHU|1|A3|G|2185
9RHU|1|A3|G|2186
9RHU|1|A3|U|2187
9RHU|1|A3|G|2188

Current chains

Chain A3

28S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain F3

Large ribosomal subunit protein uL4

Chain W2

60S ribosomal protein L27a

Chain a2

Ribosomal protein L32

Chain l2

[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B