IL_9RHU_200

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

9RHU|1|A3|U|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_200 not in the Motif Atlas

Homologous match to IL_8GLP_095

Geometric discrepancy: 0.0792

The information below is about IL_8GLP_095

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RHU|1|A3|G|2392
9RHU|1|A3|G|2393
*
9RHU|1|A3|C|2611
9RHU|1|A3|U|2612
9RHU|1|A3|C|2613

Current chains

Chain A3

28S rRNA

Nearby chains

Chain MB

60S ribosomal protein L34

Chain g2

60S ribosomal protein L38