IL_9RHU_210

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAA*U(OMC)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_210 not in the Motif Atlas

Geometric match to IL_8GLP_304

Geometric discrepancy: 0.0608

The information below is about IL_8GLP_304

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

9RHU|1|A3|G|2690
9RHU|1|A3|G|2691
9RHU|1|A3|A|2692
9RHU|1|A3|A|2693
*
9RHU|1|A3|U|3572
9RHU|1|A3|OMC|3573

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E3

Ribosomal protein L3

Chain R2

Ribosomal protein L23