IL_9RHU_217

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9RHU|1|A3|A|3395, 9RHU|1|A3|U|3411, 9RHU|1|A3|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_217 not in the Motif Atlas

Homologous match to IL_8GLP_114

Geometric discrepancy: 0.1262

The information below is about IL_8GLP_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.4

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

6

Unit IDs

9RHU|1|A3|C|3392
9RHU|1|A3|G|3393
9RHU|1|A3|A|3394
9RHU|1|A3|A|3395
9RHU|1|A3|G|3396
9RHU|1|A3|G|3397
*
9RHU|1|A3|U|3409
9RHU|1|A3|G|3410
9RHU|1|A3|U|3411
9RHU|1|A3|U|3412
9RHU|1|A3|G|3413
9RHU|1|A3|A|3414
9RHU|1|A3|C|3415
9RHU|1|A3|G|3416

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain D3

Large ribosomal subunit protein uL2

Chain k2

60S ribosomal protein L37a