IL_9RHU_233

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

9RHU|1|A3|G|3812, 9RHU|1|A3|G|3814, 9RHU|1|A3|G|3815, 9RHU|1|A3|C|3908, 9RHU|1|A3|U|3909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|3810
9RHU|1|A3|U|3811
9RHU|1|A3|G|3812
9RHU|1|A3|A|3813
9RHU|1|A3|G|3814
9RHU|1|A3|G|3815
9RHU|1|A3|C|3816
*
9RHU|1|A3|G|3907
9RHU|1|A3|C|3908
9RHU|1|A3|U|3909
9RHU|1|A3|C|3910

Current chains

Chain A3

28S rRNA

Nearby chains

Chain C2

Large ribosomal subunit protein eL8

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain D3

Large ribosomal subunit protein uL2

Chain T2

Large ribosomal subunit protein uL23