IL_9RHU_237

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9RHU|1|A3|A|3949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_237 not in the Motif Atlas

Homologous match to IL_8GLP_137

Geometric discrepancy: 0.0403

The information below is about IL_8GLP_137

Detailed Annotation

AG tHS outside loop

Broad Annotation

AG tHS outside loop

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9RHU|1|A3|G|3937
9RHU|1|A3|A|3938
*
9RHU|1|A3|U|3948
9RHU|1|A3|A|3949
9RHU|1|A3|C|3950

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L10

Chain P2

60S ribosomal protein L21

Chain X2

60S ribosomal protein L29

Chain j2

Ribosomal protein L36a