IL_9RHU_239

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

9RHU|1|A3|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_239 not in the Motif Atlas

Geometric match to IL_9AXU_093

Geometric discrepancy: 0.122

The information below is about IL_9AXU_093

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9RHU|1|A3|G|4037
9RHU|1|A3|A|4038
9RHU|1|A3|PSU|4039
*
9RHU|1|A3|A|4063
9RHU|1|A3|C|4064

Current chains

Chain A3

28S rRNA

Nearby chains

Chain X2

60S ribosomal protein L29

Chain j2

Ribosomal protein L36a