IL_9RHU_242

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GG*(PSU)CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_242 not in the Motif Atlas

Homologous match to IL_9H3G_116

Geometric discrepancy: 0.0772

The information below is about IL_9H3G_116

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9RHU|1|A3|G|4146
9RHU|1|A3|G|4147
*
9RHU|1|A3|PSU|4188
9RHU|1|A3|C|4189
9RHU|1|A3|C|4190

Current chains

Chain A3

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L10

Chain E3

Ribosomal protein L3

Chain X2

60S ribosomal protein L29

Chain p2

Eukaryotic peptide chain release factor subunit 1