IL_9RHU_267

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

9RHU|1|A3|C|4504, 9RHU|1|A3|U|4505, 9RHU|1|A3|A|4511, 9RHU|1|A3|G|4609, 9RHU|1|A3|C|4610, 9RHU|1|A3|G|4612, 9RHU|1|A3|A|4615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|C|4503
9RHU|1|A3|C|4504
9RHU|1|A3|U|4505
9RHU|1|A3|C|4506
9RHU|1|A3|G|4507
9RHU|1|A3|G|4508
9RHU|1|A3|A|4509
9RHU|1|A3|U|4510
9RHU|1|A3|A|4511
9RHU|1|A3|G|4512
*
9RHU|1|A3|U|4608
9RHU|1|A3|G|4609
9RHU|1|A3|C|4610
9RHU|1|A3|G|4611
9RHU|1|A3|G|4612
9RHU|1|A3|A|4613
9RHU|1|A3|G|4614
9RHU|1|A3|A|4615
9RHU|1|A3|G|4616

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A2

60S ribosomal protein L6

Chain D2

60S ribosomal protein L9

Chain I2

60S ribosomal protein L14

Chain K2

Large ribosomal subunit protein uL13

Chain O2

Large ribosomal subunit protein eL20