IL_9RHU_279

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9RHU|1|B3|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_279 not in the Motif Atlas

Geometric match to IL_8QYX_165

Geometric discrepancy: 0.0535

The information below is about IL_8QYX_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9RHU|1|B3|C|15
9RHU|1|B3|A|16
*
9RHU|1|B3|U|62
9RHU|1|B3|C|63
9RHU|1|B3|G|64

Current chains

Chain B3

5S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain E2

60S ribosomal protein L10

Chain F2

60S ribosomal protein L11

Chain G3

Large ribosomal subunit protein uL18