IL_9RHU_284

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RHU_284 not in the Motif Atlas

Homologous match to IL_7A0S_107

Geometric discrepancy: 0.2067

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9RHU|1|B3|U|79
9RHU|1|B3|U|80
9RHU|1|B3|G|81
*
9RHU|1|B3|C|95
9RHU|1|B3|U|96
9RHU|1|B3|G|97

Current chains

Chain B3

5S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain B2

60S ribosomal protein L7

Chain O2

Large ribosomal subunit protein eL20