IL_9RJA_049
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GUUGC*GAACUC
- Length
- 11 nucleotides
- Bulged bases
- 9RJA|1|A|U|1126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RJA_049 not in the Motif Atlas
- Geometric match to IL_8B0X_050
- Geometric discrepancy: 0.1234
- The information below is about IL_8B0X_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9RJA|1|A|G|1124
9RJA|1|A|U|1125
9RJA|1|A|U|1126
9RJA|1|A|G|1127
9RJA|1|A|C|1128
*
9RJA|1|A|G|1144
9RJA|1|A|A|1145
9RJA|1|A|A|1146
9RJA|1|A|C|1147
9RJA|1|A|U|1148
9RJA|1|A|C|1149
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
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