IL_9RJA_051

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_051 not in the Motif Atlas

Geometric match to IL_8B0X_052

Geometric discrepancy: 0.0603

The information below is about IL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.2

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9RJA|1|A|C|1158
9RJA|1|A|U|1159
9RJA|1|A|G|1160
9RJA|1|A|C|1161
*
9RJA|1|A|G|1175
9RJA|1|A|A|1176
9RJA|1|A|G|1177
9RJA|1|A|G|1178
9RJA|1|A|A|1179
9RJA|1|A|A|1180
9RJA|1|A|G|1181

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9