IL_9RJA_071
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RJA_071 not in the Motif Atlas
- Homologous match to IL_7A0S_006
- Geometric discrepancy: 0.0899
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9RJA|1|a|G|188
9RJA|1|a|G|189
9RJA|1|a|A|190
9RJA|1|a|A|191
9RJA|1|a|C|192
9RJA|1|a|U|193
9RJA|1|a|G|194
*
9RJA|1|a|C|201
9RJA|1|a|U|202
9RJA|1|a|A|203
9RJA|1|a|A|204
9RJA|1|a|G|205
9RJA|1|a|U|206
9RJA|1|a|A|207
9RJA|1|a|C|208
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain V
- Manikomycin
- Chain W
- Manikomycin
- Chain k
- 50S ribosomal protein L15
- Chain w
- Large ribosomal subunit protein bL28
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