IL_9RJA_105

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9RJA|1|a|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_105 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1518

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9RJA|1|a|C|1196
9RJA|1|a|G|1197
9RJA|1|a|U|1198
*
9RJA|1|a|A|1247
9RJA|1|a|G|1248
9RJA|1|a|U|1249
9RJA|1|a|G|1250

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

50S ribosomal protein L15

Chain p

Large ribosomal subunit protein bL20