IL_9RJA_107

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9RJA|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_107 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.17

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9RJA|1|a|C|1208
9RJA|1|a|U|1209
9RJA|1|a|G|1210
9RJA|1|a|C|1211
9RJA|1|a|G|1212
9RJA|1|a|A|1213
9RJA|1|a|A|1214
9RJA|1|a|G|1215
*
9RJA|1|a|U|1234
9RJA|1|a|G|1235
9RJA|1|a|G|1236
9RJA|1|a|A|1237
9RJA|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20