IL_9RJA_132

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9RJA|1|a|A|1801, 9RJA|1|a|C|1816, 9RJA|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_132 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0974

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9RJA|1|a|U|1798
9RJA|1|a|G|1799
9RJA|1|a|C|1800
9RJA|1|a|A|1801
9RJA|1|a|A|1802
9RJA|1|a|A|1803
9RJA|1|a|C|1804
*
9RJA|1|a|G|1813
9RJA|1|a|G|1814
9RJA|1|a|A|1815
9RJA|1|a|C|1816
9RJA|1|a|G|1817
9RJA|1|a|U|1818
9RJA|1|a|A|1819
9RJA|1|a|U|1820
9RJA|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2