IL_9RJA_154
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RJA_154 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1313
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9RJA|1|a|C|2466
9RJA|1|a|C|2467
9RJA|1|a|A|2468
9RJA|1|a|A|2469
9RJA|1|a|G|2470
*
9RJA|1|a|C|2480
9RJA|1|a|G|2481
9RJA|1|a|A|2482
9RJA|1|a|C|2483
9RJA|1|a|G|2484
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain Y
- Transfer RNA; tRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: