IL_9ROT_004

3D structure

PDB id

9ROT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

9ROT|1|A|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROT_004 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.2142

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9ROT|1|A|U|690
9ROT|1|A|A|691
9ROT|1|A|C|692
*
9ROT|1|A|G|822
9ROT|1|A|A|823

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial