IL_9ROT_016

3D structure

PDB id

9ROT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9ROT|1|A|C|904, 9ROT|1|A|C|906, 9ROT|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROT_016 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.328

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9ROT|1|A|G|887
9ROT|1|A|U|888
9ROT|1|A|G|889
9ROT|1|A|C|890
9ROT|1|A|C|891
9ROT|1|A|A|892
9ROT|1|A|G|893
*
9ROT|1|A|C|900
9ROT|1|A|G|901
9ROT|1|A|G|902
9ROT|1|A|U|903
9ROT|1|A|C|904
9ROT|1|A|A|905
9ROT|1|A|C|906
9ROT|1|A|A|907
9ROT|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial