IL_9ROT_024

3D structure

PDB id

9ROT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROT_024 not in the Motif Atlas

Geometric match to IL_9H3G_204

Geometric discrepancy: 0.1992

The information below is about IL_9H3G_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9ROT|1|A|A|1067
9ROT|1|A|A|1068
9ROT|1|A|A|1069
9ROT|1|A|C|1070
9ROT|1|A|U|1071
*
9ROT|1|A|A|1087
9ROT|1|A|C|1088
9ROT|1|A|U|1089
9ROT|1|A|A|1090
9ROT|1|A|U|1091

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain I

28S ribosomal protein S11, mitochondrial

Chain Q

Small ribosomal subunit protein bS21m